J3_5T2C_032
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUGGCAUGCUAACUAGUUACG*CCCCAACUUCUUAGAGGGACAAGUG*CACCCGAGAUUG
- Length
- 58 nucleotides
- Bulged bases
- 5T2C|1|AA|U|1397, 5T2C|1|AA|C|1403, 5T2C|1|AA|U|1404, 5T2C|1|AA|C|1436, 5T2C|1|AA|C|1437, 5T2C|1|AA|A|1454, 5T2C|1|AA|G|1473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|AA|C|1391
5T2C|1|AA|U|1392
5T2C|1|AA|G|1393
5T2C|1|AA|G|1394
5T2C|1|AA|C|1395
5T2C|1|AA|A|1396
5T2C|1|AA|U|1397
5T2C|1|AA|G|1398
5T2C|1|AA|C|1399
5T2C|1|AA|U|1400
5T2C|1|AA|A|1401
5T2C|1|AA|A|1402
5T2C|1|AA|C|1403
5T2C|1|AA|U|1404
5T2C|1|AA|A|1405
5T2C|1|AA|G|1406
5T2C|1|AA|U|1407
5T2C|1|AA|U|1408
5T2C|1|AA|A|1409
5T2C|1|AA|C|1410
5T2C|1|AA|G|1411
*
5T2C|1|AA|C|1434
5T2C|1|AA|C|1435
5T2C|1|AA|C|1436
5T2C|1|AA|C|1437
5T2C|1|AA|A|1438
5T2C|1|AA|A|1439
5T2C|1|AA|C|1440
5T2C|1|AA|U|1441
5T2C|1|AA|U|1442
5T2C|1|AA|C|1443
5T2C|1|AA|U|1444
5T2C|1|AA|U|1445
5T2C|1|AA|A|1446
5T2C|1|AA|G|1447
5T2C|1|AA|A|1448
5T2C|1|AA|G|1449
5T2C|1|AA|G|1450
5T2C|1|AA|G|1451
5T2C|1|AA|A|1452
5T2C|1|AA|C|1453
5T2C|1|AA|A|1454
5T2C|1|AA|A|1455
5T2C|1|AA|G|1456
5T2C|1|AA|U|1457
5T2C|1|AA|G|1458
*
5T2C|1|AA|C|1468
5T2C|1|AA|A|1469
5T2C|1|AA|C|1470
5T2C|1|AA|C|1471
5T2C|1|AA|C|1472
5T2C|1|AA|G|1473
5T2C|1|AA|A|1474
5T2C|1|AA|G|1475
5T2C|1|AA|A|1476
5T2C|1|AA|U|1477
5T2C|1|AA|U|1478
5T2C|1|AA|G|1479
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S20
- Chain AG
- 40S ribosomal protein S29
- Chain AI
- Receptor of activated protein C kinase 1
- Chain Aq
- 40S ribosomal protein S3
- Chain As
- 40S ribosomal protein S5
- Chain Ay
- 40S ribosomal protein S16
- Chain Az
- 40S ribosomal protein S17
Coloring options: