J3_5T2C_034

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCAGUCC*GGUGC*GACGUC

Length

20 nucleotides

Bulged bases

5T2C|1|A|C|451, 5T2C|1|A|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|A|G|448
5T2C|1|A|C|449
5T2C|1|A|G|450
5T2C|1|A|C|451
5T2C|1|A|A|452
5T2C|1|A|G|453
5T2C|1|A|U|454
5T2C|1|A|C|455
5T2C|1|A|C|456
*
5T2C|1|A|G|700
5T2C|1|A|G|701
5T2C|1|A|U|702
5T2C|1|A|G|703
5T2C|1|A|C|704
*
5T2C|1|A|G|1293
5T2C|1|A|A|1294
5T2C|1|A|C|1295
5T2C|1|A|G|1296
5T2C|1|A|U|1297
5T2C|1|A|C|1298

Current chains

Chain A

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L6

Chain Y

60S ribosomal protein L32

Chain Z

60S ribosomal protein L35a

Chain k

60S ribosomal protein L28