J3_5T2C_035

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5T2C|1|A|A|1534, 5T2C|1|A|G|1641, 5T2C|1|A|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T2C_035 not in the Motif Atlas

Homologous match to J3_8CRE_009

Geometric discrepancy: 0.1334

The information below is about J3_8CRE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|U|1531
5T2C|1|A|G|1532
5T2C|1|A|A|1533
5T2C|1|A|A|1534
5T2C|1|A|C|1535
5T2C|1|A|U|1536
5T2C|1|A|A|1537
*
5T2C|1|A|U|1622
5T2C|1|A|A|1623
5T2C|1|A|G|1624
*
5T2C|1|A|C|1640
5T2C|1|A|G|1641
5T2C|1|A|A|1642
5T2C|1|A|A|1643

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain d

60S ribosomal protein L37

Chain t

60S ribosomal protein L15