J3_5T62_001
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 5T62|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0931
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|C|113
5T62|1|A|A|114
5T62|1|A|A|115
5T62|1|A|A|116
5T62|1|A|U|117
5T62|1|A|U|118
5T62|1|A|U|119
5T62|1|A|G|120
5T62|1|A|A|121
5T62|1|A|A|122
5T62|1|A|A|123
*
5T62|1|A|U|149
5T62|1|A|A|150
5T62|1|A|A|151
5T62|1|A|U|152
5T62|1|A|U|153
5T62|1|A|U|154
5T62|1|A|G|155
5T62|1|A|G|156
5T62|1|A|A|157
5T62|1|A|G|158
*
5T62|1|A|C|263
5T62|1|A|G|264
5T62|1|A|A|265
5T62|1|A|A|266
5T62|1|A|G|267
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L13-A
- Chain a
- 60S ribosomal protein L15-A
- Chain u
- 60S ribosomal protein L35-A
- Chain v
- 60S ribosomal protein L36-A
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