Motif J3_88489.1 Version J3_88489.1 of this group appears in releases 3.80 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 6-16 | 8-11 | 9-10 | 14-15 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_001 | 8C3A | 0.0000 | 4 | 1 | LSU rRNA | U | 148 | A | 149 | A | 150 | U | 151 | U | 152 | U | 153 | G | 154 | A | 156 | G | 157 | * | C | 263 | G | 264 | A | 265 | C | 266 | G | 267 | * | C | 112 | A | 113 | A | 114 | A | 115 | U | 117 | U | 118 | A | 121 | A | 122 | cWW | tWH | tHS | cWW | cWW |
| 2 | J3_5TBW_001 | 5TBW | 0.0759 | 4 | 1 | LSU rRNA | U | 149 | A | 150 | A | 151 | U | 152 | U | 153 | U | 154 | G | 155 | A | 157 | G | 158 | * | C | 263 | G | 264 | A | 265 | A | 266 | G | 267 | * | C | 113 | A | 114 | A | 115 | A | 116 | U | 118 | U | 119 | A | 122 | A | 123 | cWW | tWH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAUUUGAAA*UAAUUUGAAG*CGACG | 1 |
| CAAAUUUGAAA*UAAUUUGGAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUUUGAA*AAUUUGAA*GAC | 1 |
| AAAUUUGAA*AAUUUGGA*GAA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: