J3_5T62_003
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5T62|1|A|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_003 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1285
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|U|502
5T62|1|A|C|503
*
5T62|1|A|G|588
5T62|1|A|A|589
5T62|1|A|G|590
5T62|1|A|G|591
5T62|1|A|A|592
5T62|1|A|C|593
5T62|1|A|U|594
5T62|1|A|G|595
5T62|1|A|C|596
5T62|1|A|G|597
*
5T62|1|A|C|606
5T62|1|A|A|607
5T62|1|A|A|608
5T62|1|A|G|609
5T62|1|A|G|610
5T62|1|A|A|611
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain H
- 60S ribosomal protein L6-A
- Chain I
- 60S ribosomal protein L7-A
- Chain r
- 60S ribosomal protein L32
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