J3_5T62_009
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_009 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.0856
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5T62|1|A|U|1526
5T62|1|A|C|1527
5T62|1|A|G|1528
5T62|1|A|A|1529
5T62|1|A|U|1530
5T62|1|A|C|1531
*
5T62|1|A|G|1591
5T62|1|A|G|1592
5T62|1|A|A|1593
5T62|1|A|A|1594
5T62|1|A|U|1595
*
5T62|1|A|A|1612
5T62|1|A|A|1613
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain k
- 60S ribosomal protein L25
- Chain t
- 60S ribosomal protein L34-A
- Chain x
- 60S ribosomal protein L38
- Chain y
- 60S ribosomal protein L39
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