J3_5T62_011
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_011 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.1381
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5T62|1|A|A|2432
5T62|1|A|U|2433
5T62|1|A|U|2434
5T62|1|A|G|2435
*
5T62|1|A|C|2512
5T62|1|A|U|2513
5T62|1|A|U|2514
5T62|1|A|A|2515
5T62|1|A|U|2516
5T62|1|A|U|2517
*
5T62|1|A|A|2590
5T62|1|A|A|2591
5T62|1|A|G|2592
5T62|1|A|A|2593
5T62|1|A|C|2594
5T62|1|A|A|2595
5T62|1|A|U|2596
5T62|1|A|U|2597
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L8-A
- Chain a
- 60S ribosomal protein L15-A
Coloring options: