J3_5T62_020
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 5T62|1|A|A|398, 5T62|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_020 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1064
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5T62|1|A|A|369
5T62|1|A|U|370
5T62|1|A|G|371
5T62|1|A|A|372
5T62|1|A|A|373
5T62|1|A|A|374
5T62|1|A|A|375
5T62|1|A|G|376
5T62|1|A|A|377
5T62|1|A|A|378
5T62|1|A|C|379
*
5T62|1|A|G|390
5T62|1|A|A|391
5T62|1|A|G|392
5T62|1|A|U|393
5T62|1|A|G|394
5T62|1|A|A|395
5T62|1|A|A|396
5T62|1|A|A|397
5T62|1|A|A|398
5T62|1|A|A|399
5T62|1|A|G|400
5T62|1|A|U|401
5T62|1|A|A|402
5T62|1|A|C|403
5T62|1|A|G|404
*
5T62|1|C|C|19
5T62|1|C|U|20
Current chains
- Chain A
- 25S Ribosomal RNA
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain c
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L26-A
- Chain y
- 60S ribosomal protein L39
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