J3_5T62_021
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 5T62|1|A|A|1065, 5T62|1|A|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_021 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.2362
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5T62|1|A|U|986
5T62|1|A|U|987
*
5T62|1|A|A|1062
5T62|1|A|G|1063
5T62|1|A|A|1064
5T62|1|A|A|1065
5T62|1|A|G|1066
*
5T62|1|A|C|1092
5T62|1|A|A|1093
5T62|1|A|U|1094
5T62|1|A|U|1095
5T62|1|A|U|1096
5T62|1|A|G|1097
5T62|1|A|A|1098
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L7-A
- Chain g
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L29
Coloring options: