J3_5T62_026

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

5T62|1|B|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T62_026 not in the Motif Atlas

Homologous match to J3_8P9A_066

Geometric discrepancy: 0.1339

The information below is about J3_8P9A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

5T62|1|B|C|9
5T62|1|B|C|10
5T62|1|B|A|11
5T62|1|B|U|12
5T62|1|B|A|13
5T62|1|B|U|14
*
5T62|1|B|A|66
5T62|1|B|G|67
*
5T62|1|B|U|111
5T62|1|B|G|112

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain G

60S ribosomal protein L5

Chain L

60S ribosomal protein L10

Chain g

60S ribosomal protein L21-A