J3_5T6R_001
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T6R_001 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.0986
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
5T6R|1|A|A|369
5T6R|1|A|U|370
5T6R|1|A|G|371
5T6R|1|A|A|372
5T6R|1|A|A|373
5T6R|1|A|A|374
5T6R|1|A|A|375
5T6R|1|A|G|376
*
5T6R|1|A|C|403
5T6R|1|A|G|404
*
5T6R|1|C|C|19
5T6R|1|C|U|20
Current chains
- Chain A
- 25S Ribosomal RNA
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L26-A
- Chain y
- 60S ribosomal protein L39
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