J3_5T6R_004
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 5T6R|1|A|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T6R_004 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1071
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5T6R|1|A|A|828
5T6R|1|A|U|829
5T6R|1|A|A|830
5T6R|1|A|G|831
*
5T6R|1|A|C|863
5T6R|1|A|G|864
5T6R|1|A|U|865
5T6R|1|A|A|866
5T6R|1|A|G|867
*
5T6R|1|A|U|892
5T6R|1|A|C|893
5T6R|1|A|G|894
5T6R|1|A|A|895
5T6R|1|A|A|896
5T6R|1|A|U|897
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L2-A
- Chain e
- 60S ribosomal protein L19-A
- Chain t
- 60S ribosomal protein L34-A
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