J3_5T6R_023

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T6R_023 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0871

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

5T6R|1|A|A|1654
5T6R|1|A|G|1655
5T6R|1|A|A|1656
5T6R|1|A|C|1657
5T6R|1|A|G|1658
*
5T6R|1|A|C|1791
5T6R|1|A|C|1792
*
5T6R|1|A|G|1796
5T6R|1|A|A|1797
5T6R|1|A|A|1798
5T6R|1|A|A|1799
5T6R|1|A|A|1800
5T6R|1|A|U|1801

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L43-A

Chain t

60S ribosomal protein L34-A