J3_5T7V_013

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

5T7V|1|B|C|1651, 5T7V|1|B|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T7V_013 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1553

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

5T7V|1|B|C|1342
5T7V|1|B|U|1343
5T7V|1|B|A|1344
5T7V|1|B|A|1345
5T7V|1|B|G|1346
*
5T7V|1|B|C|1649
5T7V|1|B|G|1650
5T7V|1|B|C|1651
5T7V|1|B|A|1652
5T7V|1|B|A|1653
5T7V|1|B|A|1654
5T7V|1|B|C|1655
*
5T7V|1|B|G|1664
5T7V|1|B|U|1665
5T7V|1|B|A|1666
5T7V|1|B|G|1667

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LG

50S ribosomal protein L34