J3_5T7V_014

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUG*CUAACC*GAGACAGU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T7V_014 not in the Motif Atlas

Geometric match to J3_5TBW_012

Geometric discrepancy: 0.3276

The information below is about J3_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_18654.1

Basepair signature

cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F

Number of instances in this motif group

2

Unit IDs

5T7V|1|B|A|2117
5T7V|1|B|U|2118
5T7V|1|B|U|2119
5T7V|1|B|G|2120
*
5T7V|1|B|C|2223
5T7V|1|B|U|2224
5T7V|1|B|A|2225
5T7V|1|B|A|2226
5T7V|1|B|C|2227
5T7V|1|B|C|2228
*
5T7V|1|B|G|2249
5T7V|1|B|A|2250
5T7V|1|B|G|2251
5T7V|1|B|A|2252
5T7V|1|B|C|2253
5T7V|1|B|A|2254
5T7V|1|B|G|2255
5T7V|1|B|U|2256

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L2

50S ribosomal protein L2

Chain LA

50S ribosomal protein L28