J3_5T7V_015

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GAG*CAUAAG

Length

12 nucleotides

Bulged bases

5T7V|1|B|U|2361, 5T7V|1|B|A|2363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T7V_015 not in the Motif Atlas

Homologous match to J3_4WF9_008

Geometric discrepancy: 0.2172

The information below is about J3_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|C|2322
5T7V|1|B|U|2323
5T7V|1|B|C|2324
*
5T7V|1|B|G|2348
5T7V|1|B|A|2349
5T7V|1|B|G|2350
*
5T7V|1|B|C|2359
5T7V|1|B|A|2360
5T7V|1|B|U|2361
5T7V|1|B|A|2362
5T7V|1|B|A|2363
5T7V|1|B|G|2364

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain L9

50S ribosomal protein L27

Chain LR

50S ribosomal protein L18