J3_5T7V_025

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAU*AAUCAAAGAA*UGUAG

Length

20 nucleotides

Bulged bases

5T7V|1|B|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T7V_025 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1412

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5T7V|1|B|C|340
5T7V|1|B|G|341
5T7V|1|B|A|342
5T7V|1|B|A|343
5T7V|1|B|U|344
*
5T7V|1|B|A|359
5T7V|1|B|A|360
5T7V|1|B|U|361
5T7V|1|B|C|362
5T7V|1|B|A|363
5T7V|1|B|A|364
5T7V|1|B|A|365
5T7V|1|B|G|366
5T7V|1|B|A|367
5T7V|1|B|A|368
*
5T7V|1|B|U|380
5T7V|1|B|G|381
5T7V|1|B|U|382
5T7V|1|B|A|383
5T7V|1|B|G|384

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L7

50S ribosomal protein L24

Chain LJ

50S ribosomal protein L4