J3_5T7V_038

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

5T7V|1|B|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T7V_038 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.1442

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

5T7V|1|B|U|1381
5T7V|1|B|C|1382
5T7V|1|B|G|1383
5T7V|1|B|G|1384
5T7V|1|B|G|1385
5T7V|1|B|U|1386
5T7V|1|B|C|1387
*
5T7V|1|B|G|1418
5T7V|1|B|A|1419
5T7V|1|B|U|1420
5T7V|1|B|A|1421
5T7V|1|B|A|1422
*
5T7V|1|B|U|1439
5T7V|1|B|A|1440

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L23