J3_5TBW_004

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5TBW|1|1|A|817, 5TBW|1|1|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5TBW|1|1|U|814
5TBW|1|1|G|815
5TBW|1|1|A|816
5TBW|1|1|A|817
5TBW|1|1|C|818
5TBW|1|1|U|819
5TBW|1|1|A|820
*
5TBW|1|1|U|905
5TBW|1|1|A|906
5TBW|1|1|G|907
*
5TBW|1|1|C|923
5TBW|1|1|G|924
5TBW|1|1|A|925
5TBW|1|1|A|926

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L37-A

Chain AM

60S ribosomal protein L39

Chain j

60S ribosomal protein L2-A

Chain v

60S ribosomal protein L15-A