J3_5TBW_008

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

5TBW|1|1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|U|1479
5TBW|1|1|G|1480
5TBW|1|1|A|1481
5TBW|1|1|A|1482
5TBW|1|1|G|1483
5TBW|1|1|U|1484
5TBW|1|1|G|1485
*
5TBW|1|1|C|1857
5TBW|1|1|A|1858
5TBW|1|1|A|1859
*
5TBW|1|1|U|1871
5TBW|1|1|C|1872
5TBW|1|1|U|1873
5TBW|1|1|A|1874

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L34-A

Chain z

60S ribosomal protein L19-A