J3_5TBW_009

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAA*UGAUAAC*GUC

Length

14 nucleotides

Bulged bases

5TBW|1|1|U|1840, 5TBW|1|1|A|1841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|G|1488
5TBW|1|1|A|1489
5TBW|1|1|A|1490
5TBW|1|1|A|1491
*
5TBW|1|1|U|1837
5TBW|1|1|G|1838
5TBW|1|1|A|1839
5TBW|1|1|U|1840
5TBW|1|1|A|1841
5TBW|1|1|A|1842
5TBW|1|1|C|1843
*
5TBW|1|1|G|1852
5TBW|1|1|U|1853
5TBW|1|1|C|1854

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AH

60S ribosomal protein L34-A

Chain AK

60S ribosomal protein L37-A

Chain AM

60S ribosomal protein L39