#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8break 9 10 11 121-122-113-73-115-68-9
1 J3_8C3A_0078C3A0.095621 LSU rRNAU1833C1834A1835A1838C1839*G1848U1849C1850*G1484A1485A1486A1487cWWntSHtHWntWWcWWcWW
2 J3_5TBW_0095TBW0.000021 LSU rRNAU1837G1838A1839A1842C1843*G1852U1853C1854*G1488A1489A1490A1491cWWntSHtHWntWWcWWcWW
3 J3_4V9F_0064V9F0.105020 LSU rRNAC1680G1681A1682A1685C1686*G1695U1696G1697*U1412A1413A1414G1415cWWtSHtHWtWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAA*UCAUAAC*GUC1
GAAA*UGAUAAC*GUC1
UAAG*CGAGAAC*GUG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*CAUAA*U1
AA*GAUAA*U1
AA*GAGAA*U1

Release history

Release3.893.90
Date2024-10-092024-11-06
StatusNew id, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Basepair signature
    cWW-tSH-tWW-tHW-F-F-cWW-cWW
    Heat map statistics
    Min 0.10 | Avg 0.07 | Max 0.12
    Help

    Coloring options:

    J3_8C3A_007:J3_8C3A_007 = 0J3_8C3A_007:J3_5TBW_009 = 0.0956J3_8C3A_007:J3_4V9F_006 = 0.1217J3_5TBW_009:J3_8C3A_007 = 0.0956J3_5TBW_009:J3_5TBW_009 = 0J3_5TBW_009:J3_4V9F_006 = 0.105J3_4V9F_006:J3_8C3A_007 = 0.1217J3_4V9F_006:J3_5TBW_009 = 0.105J3_4V9F_006:J3_4V9F_006 = 0J3_8C3A_007J3_5TBW_009J3_4V9F_006Discrepancy0.000.020.040.060.080.100.12
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