J3_5TBW_013

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

5TBW|1|1|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

5TBW|1|1|C|2664
5TBW|1|1|U|2665
5TBW|1|1|C|2666
*
5TBW|1|1|G|2690
5TBW|1|1|A|2691
5TBW|1|1|A|2692
*
5TBW|1|1|U|2701
5TBW|1|1|A|2702
5TBW|1|1|A|2703
5TBW|1|1|A|2704
5TBW|1|1|A|2705
5TBW|1|1|G|2706

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain i

Suppressor protein STM1

Chain m

60S ribosomal protein L5

Chain s

60S ribosomal protein L11-B