J3_5TBW_014

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

5TBW|1|1|A|2887, 5TBW|1|1|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|U|2886
5TBW|1|1|A|2887
5TBW|1|1|U|2888
5TBW|1|1|C|2889
*
5TBW|1|1|G|2914
5TBW|1|1|U|2915
5TBW|1|1|U|2916
*
5TBW|1|1|A|2930
5TBW|1|1|C|2931
5TBW|1|1|U|2932
5TBW|1|1|A|2933
5TBW|1|1|A|2934
5TBW|1|1|U|2935
5TBW|1|1|A|2936

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

60S ribosomal protein L23-A

Chain k

60S ribosomal protein L3

Chain w

60S ribosomal protein L16-A