J3_5TBW_017

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TBW_017 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0615

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

5TBW|1|A|A|41
5TBW|1|A|G|42
*
5TBW|1|A|C|433
5TBW|1|A|G|434
5TBW|1|A|C|435
5TBW|1|A|A|436
5TBW|1|A|A|437
5TBW|1|A|A|438
5TBW|1|A|U|439
*
5TBW|1|A|A|464
5TBW|1|A|G|465
5TBW|1|A|U|466

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S23-A