J3_5TBW_026
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 5TBW|1|A|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TBW_026 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.1533
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5TBW|1|A|U|1283
5TBW|1|A|C|1284
5TBW|1|A|U|1285
5TBW|1|A|U|1286
5TBW|1|A|A|1287
5TBW|1|A|G|1288
*
5TBW|1|A|C|1327
5TBW|1|A|G|1328
5TBW|1|A|A|1329
5TBW|1|A|G|1330
5TBW|1|A|A|1331
5TBW|1|A|C|1332
*
5TBW|1|A|G|1419
5TBW|1|A|C|1420
5TBW|1|A|A|1421
5TBW|1|A|A|1422
5TBW|1|A|U|1423
5TBW|1|A|A|1424
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- 40S ribosomal protein S3
- Chain R
- 40S ribosomal protein S16-A
- Chain S
- 40S ribosomal protein S17-A
- Chain V
- 40S ribosomal protein S20
- Chain e
- 40S ribosomal protein S29-A
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