3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
5TBW|1|A|U|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5TBW_026 not in the Motif Atlas
Homologous match to J3_8P9A_080
Geometric discrepancy: 0.1533
The information below is about J3_8P9A_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_99563.1
Basepair signature
cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
Number of instances in this motif group
1

Unit IDs

5TBW|1|A|U|1283
5TBW|1|A|C|1284
5TBW|1|A|U|1285
5TBW|1|A|U|1286
5TBW|1|A|A|1287
5TBW|1|A|G|1288
*
5TBW|1|A|C|1327
5TBW|1|A|G|1328
5TBW|1|A|A|1329
5TBW|1|A|G|1330
5TBW|1|A|A|1331
5TBW|1|A|C|1332
*
5TBW|1|A|G|1419
5TBW|1|A|C|1420
5TBW|1|A|A|1421
5TBW|1|A|A|1422
5TBW|1|A|U|1423
5TBW|1|A|A|1424

Current chains

Chain A
18S ribosomal RNA

Nearby chains

Chain D
40S ribosomal protein S2
Chain E
40S ribosomal protein S3
Chain R
40S ribosomal protein S16-A
Chain S
40S ribosomal protein S17-A
Chain V
40S ribosomal protein S20
Chain e
40S ribosomal protein S29-A

Coloring options:


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