J3_5TBW_045

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

5TBW|1|AS|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52398.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5TBW|1|AS|C|9
5TBW|1|AS|C|10
5TBW|1|AS|A|11
5TBW|1|AS|U|12
5TBW|1|AS|A|13
5TBW|1|AS|U|14
*
5TBW|1|AS|A|66
5TBW|1|AS|G|67
*
5TBW|1|AS|U|111
5TBW|1|AS|G|112

Current chains

Chain AS

5S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CG

60S ribosomal protein L5

Chain CL

60S ribosomal protein L10

Chain CV

60S ribosomal protein L21-A