Motif J3_52398.1 Version J3_52398.1 of this group appears in releases 3.88 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 1-9 | 3-7 | 5-6 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8VTW_047 | 8VTW | 0.3373 | 2 | 1B | 5S rRNA | C | 11 | C | 12 | A | 13 | A | 15 | G | 16 | * | C | 68 | G | 69 | * | U | 108 | G | 110 | cWW | tSs | cWW | cWW |
| 2 | J3_1UN6_002 | 1UN6 | 0.1692 | 1 | F | 5S RIBOSOMAL RNA | C | 9 | C | 10 | A | 11 | A | 13 | C | 14 | * | G | 65 | G | 66 | * | U | 109 | G | 110 | cWW | tSs | cWW | cWW |
| 3 | J3_8C3A_059 | 8C3A | 0.0000 | 1 | 3 | 5S rRNA | C | 9 | C | 10 | A | 11 | A | 13 | U | 14 | * | A | 66 | G | 67 | * | U | 111 | G | 112 | cWW | tSs | cWW | cWW |
| 4 | J3_5TBW_045 | 5TBW | 0.0807 | 1 | AS | 5S rRNA | C | 9 | C | 10 | A | 11 | A | 13 | U | 14 | * | A | 66 | G | 67 | * | U | 111 | G | 112 | cWW | tSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAUAU*AG*UG | 2 |
| CCAUAG*CG*UCG | 1 |
| CCACAC*GG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAUA** | 2 |
| CAUA**C | 1 |
| CACA** | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Heat map statistics
- Min 0.08 | Avg 0.18 | Max 0.35
Coloring options: