3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AG*CGCAAAU*AGU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5TBW_046 not in the Motif Atlas
Geometric match to J3_4V88_078
Geometric discrepancy: 0.0464
The information below is about J3_4V88_078
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.1
Basepair signature
cWW-F-cWW-F-F-cSW-F-cWW
Number of instances in this motif group
5

Unit IDs

5TBW|1|sR|A|41
5TBW|1|sR|G|42
*
5TBW|1|sR|C|433
5TBW|1|sR|G|434
5TBW|1|sR|C|435
5TBW|1|sR|A|436
5TBW|1|sR|A|437
5TBW|1|sR|A|438
5TBW|1|sR|U|439
*
5TBW|1|sR|A|464
5TBW|1|sR|G|465
5TBW|1|sR|U|466

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain d3
40S ribosomal protein S23-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.439 s