J3_5TBW_059
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 5TBW|1|1|U|117, 5TBW|1|1|G|120, 5TBW|1|1|A|121, 5TBW|1|1|U|147, 5TBW|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75145.1
- Basepair signature
- cWW-F-cWW-F-tSH-F-F-F-F-F-F-F-tWH-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5TBW|1|1|C|113
5TBW|1|1|A|114
5TBW|1|1|A|115
5TBW|1|1|A|116
5TBW|1|1|U|117
5TBW|1|1|U|118
5TBW|1|1|U|119
5TBW|1|1|G|120
5TBW|1|1|A|121
5TBW|1|1|A|122
5TBW|1|1|A|123
5TBW|1|1|U|124
*
5TBW|1|1|A|144
5TBW|1|1|G|145
5TBW|1|1|U|146
5TBW|1|1|U|147
5TBW|1|1|G|148
5TBW|1|1|U|149
5TBW|1|1|A|150
5TBW|1|1|A|151
5TBW|1|1|U|152
5TBW|1|1|U|153
5TBW|1|1|U|154
5TBW|1|1|G|155
5TBW|1|1|G|156
5TBW|1|1|A|157
5TBW|1|1|G|158
*
5TBW|1|1|C|263
5TBW|1|1|G|264
5TBW|1|1|A|265
5TBW|1|1|A|266
5TBW|1|1|G|267
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AI
- 60S ribosomal protein L35-A
- Chain AJ
- 60S ribosomal protein L36-A
- Chain p
- 60S ribosomal protein L8-A
- Chain t
- 60S ribosomal protein L13-A
- Chain v
- 60S ribosomal protein L15-A
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