Motif J3_75145.1 Version J3_75145.1 of this group appears in releases 3.88 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | break | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 1-27 | 2-25 | 4-24 | 4-25 | 5-26 | 10-20 | 12-15 | 13-14 | 18-19 | |||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_045 | 8C3A | 0.0000 | 5 | 1 | LSU rRNA | A | 143 | G | 144 | U | 145 | G | 147 | U | 148 | A | 149 | A | 150 | U | 151 | U | 152 | U | 153 | G | 154 | A | 156 | G | 157 | * | C | 263 | G | 264 | A | 265 | C | 266 | G | 267 | * | C | 112 | A | 113 | A | 114 | A | 115 | U | 117 | U | 118 | A | 121 | A | 122 | U | 123 | cWW | ncWB | ntSH | cWW | tWH | tHS | cWW | cWW | |
| 2 | J3_5TBW_059 | 5TBW | 0.0672 | 5 | 1 | LSU rRNA | A | 144 | G | 145 | U | 146 | G | 148 | U | 149 | A | 150 | A | 151 | U | 152 | U | 153 | U | 154 | G | 155 | A | 157 | G | 158 | * | C | 263 | G | 264 | A | 265 | A | 266 | G | 267 | * | C | 113 | A | 114 | A | 115 | A | 116 | U | 118 | U | 119 | A | 122 | A | 123 | U | 124 | cWW | ntsS | ncWB | tSH | cWW | tWH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAUUUGAAAU*AGUUGUAAUUUGAAG*CGACG | 1 |
| CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAUUUGAAA*GUUGUAAUUUGAA*GAC | 1 |
| AAAUUUGAAA*GUUGUAAUUUGGA*GAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-cWW-F-tSH-F-F-F-F-F-F-F-tWH-F-cWW-F-F-tHS-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.03 | Max 0.07
Coloring options: