J3_5TBW_065
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUGA*UGCAGGCCACCAU
- Length
- 35 nucleotides
- Bulged bases
- 5TBW|1|1|C|1556, 5TBW|1|1|A|1558, 5TBW|1|1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54939.1
- Basepair signature
- cWW-tSH-tWH-F-tWW-F-tHS-F-cWW-F-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5TBW|1|1|A|1537
5TBW|1|1|G|1538
5TBW|1|1|A|1539
5TBW|1|1|U|1540
5TBW|1|1|G|1541
5TBW|1|1|G|1542
*
5TBW|1|1|C|1551
5TBW|1|1|G|1552
5TBW|1|1|U|1553
5TBW|1|1|U|1554
5TBW|1|1|U|1555
5TBW|1|1|C|1556
5TBW|1|1|A|1557
5TBW|1|1|A|1558
5TBW|1|1|A|1559
5TBW|1|1|G|1560
5TBW|1|1|G|1561
5TBW|1|1|C|1562
5TBW|1|1|C|1563
5TBW|1|1|U|1564
5TBW|1|1|G|1565
5TBW|1|1|A|1566
*
5TBW|1|1|U|1572
5TBW|1|1|G|1573
5TBW|1|1|C|1574
5TBW|1|1|A|1575
5TBW|1|1|G|1576
5TBW|1|1|G|1577
5TBW|1|1|C|1578
5TBW|1|1|C|1579
5TBW|1|1|A|1580
5TBW|1|1|C|1581
5TBW|1|1|C|1582
5TBW|1|1|A|1583
5TBW|1|1|U|1584
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- 60S ribosomal protein L25
- Chain AK
- 60S ribosomal protein L37-A
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
- Chain v
- 60S ribosomal protein L15-A
Coloring options: