Motif J3_54939.1 Version J3_54939.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | break | 27 | 28 | 29 | 30 | 31 | 32 | 1-32 | 2-31 | 3-29 | 4-7 | 5-30 | 10-21 | 11-20 | 14-15 | 25-28 | 26-27 | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5TBW_065 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | C | 1551 | G | 1552 | U | 1553 | U | 1554 | U | 1555 | A | 1557 | A | 1559 | G | 1560 | G | 1561 | C | 1562 | C | 1563 | U | 1564 | G | 1565 | A | 1566 | * | U | 1572 | G | 1573 | C | 1574 | A | 1575 | G | 1576 | G | 1577 | C | 1578 | C | 1579 | A | 1580 | C | 1582 | A | 1583 | U | 1584 | * | A | 1537 | G | 1538 | A | 1539 | U | 1540 | G | 1541 | G | 1542 | cWW | tSH | tWH | tWW | ntWW | ncWw | ncSW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAUGG*CGUUUCAAAGGCCUGA*UGCAGGCCACCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUG*GUUUCAAAGGCCUG*GCAGGCCACCA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-tSH-tWH-F-tWW-F-tHS-F-cWW-F-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: