J3_5TBW_069

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*AGAUGUA*UCUG

Length

14 nucleotides

Bulged bases

5TBW|1|1|U|3319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_42762.1

Basepair signature

cWW-cWW-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5TBW|1|1|C|3298
5TBW|1|1|A|3299
5TBW|1|1|U|3300
*
5TBW|1|1|A|3314
5TBW|1|1|G|3315
5TBW|1|1|A|3316
5TBW|1|1|U|3317
5TBW|1|1|G|3318
5TBW|1|1|U|3319
5TBW|1|1|A|3320
*
5TBW|1|1|U|3387
5TBW|1|1|C|3388
5TBW|1|1|U|3389
5TBW|1|1|G|3390

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L31-A

Chain k

60S ribosomal protein L3

Chain x

60S ribosomal protein L17-A