J3_5TBW_080
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 5TBW|1|AR|A|398, 5TBW|1|AR|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TBW_080 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.035
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5TBW|1|AR|A|369
5TBW|1|AR|U|370
5TBW|1|AR|G|371
5TBW|1|AR|A|372
5TBW|1|AR|A|373
5TBW|1|AR|A|374
5TBW|1|AR|A|375
5TBW|1|AR|G|376
5TBW|1|AR|A|377
5TBW|1|AR|A|378
5TBW|1|AR|C|379
*
5TBW|1|AR|G|390
5TBW|1|AR|A|391
5TBW|1|AR|G|392
5TBW|1|AR|U|393
5TBW|1|AR|G|394
5TBW|1|AR|A|395
5TBW|1|AR|A|396
5TBW|1|AR|A|397
5TBW|1|AR|A|398
5TBW|1|AR|A|399
5TBW|1|AR|G|400
5TBW|1|AR|U|401
5TBW|1|AR|A|402
5TBW|1|AR|C|403
5TBW|1|AR|G|404
*
5TBW|1|AT|C|19
5TBW|1|AT|U|20
Current chains
- Chain AR
- 25S ribosomal RNA
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CR
- 60S ribosomal protein L17-A
- Chain DA
- 60S ribosomal protein L26-A
- Chain DN
- 60S ribosomal protein L39
Coloring options: