J3_5TCU_012

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

5TCU|1|B|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_012 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2068

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|C|272
5TCU|1|B|A|273
5TCU|1|B|A|274
5TCU|1|B|A|275
5TCU|1|B|C|276
*
5TCU|1|B|G|295
5TCU|1|B|G|296
5TCU|1|B|G|297
5TCU|1|B|U|298
5TCU|1|B|U|299
5TCU|1|B|G|300
5TCU|1|B|U|301
5TCU|1|B|A|302
*
5TCU|1|B|U|415
5TCU|1|B|G|416

Current chains

Chain B

23S RRNA

Nearby chains