J3_5TCU_015

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_015 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1679

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5TCU|1|B|C|1335
5TCU|1|B|G|1336
5TCU|1|B|A|1337
5TCU|1|B|U|1338
5TCU|1|B|U|1339
5TCU|1|B|G|1340
*
5TCU|1|B|C|1669
5TCU|1|B|A|1670
5TCU|1|B|A|1671
*
5TCU|1|B|U|1683
5TCU|1|B|A|1684
5TCU|1|B|A|1685
5TCU|1|B|G|1686

Current chains

Chain B

23S RRNA

Nearby chains