J3_5TCU_016
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAAG*CGCAAAC*GUA
- Length
- 14 nucleotides
- Bulged bases
- 5TCU|1|B|C|1651, 5TCU|1|B|A|1653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TCU_016 not in the Motif Atlas
- Homologous match to J3_7RQB_008
- Geometric discrepancy: 0.1899
- The information below is about J3_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16623.1
- Basepair signature
- cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5TCU|1|B|U|1343
5TCU|1|B|A|1344
5TCU|1|B|A|1345
5TCU|1|B|G|1346
*
5TCU|1|B|C|1649
5TCU|1|B|G|1650
5TCU|1|B|C|1651
5TCU|1|B|A|1652
5TCU|1|B|A|1653
5TCU|1|B|A|1654
5TCU|1|B|C|1655
*
5TCU|1|B|G|1664
5TCU|1|B|U|1665
5TCU|1|B|A|1666
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain LG
- 50S ribosomal protein L34
Coloring options: