J3_5TCU_018

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_018 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1972

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|U|2118
5TCU|1|B|U|2119
5TCU|1|B|G|2120
*
5TCU|1|B|C|2223
5TCU|1|B|U|2224
5TCU|1|B|A|2225
5TCU|1|B|A|2226
5TCU|1|B|C|2227
5TCU|1|B|C|2228
*
5TCU|1|B|G|2249
5TCU|1|B|A|2250
5TCU|1|B|G|2251
5TCU|1|B|A|2252
5TCU|1|B|C|2253
5TCU|1|B|A|2254
5TCU|1|B|G|2255

Current chains

Chain B

23S RRNA

Nearby chains

Chain L2

50S ribosomal protein L2

Chain LA

50S ribosomal protein L28