J3_5TCU_024
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGUU*AACUUGA*UGACG
- Length
- 17 nucleotides
- Bulged bases
- 5TCU|1|A|U|661
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TCU_024 not in the Motif Atlas
- Homologous match to J3_6CZR_060
- Geometric discrepancy: 0.1957
- The information below is about J3_6CZR_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_72319.1
- Basepair signature
- cWW-F-F-F-F-tWH-F-F-cWW-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5TCU|1|A|C|594
5TCU|1|A|G|595
5TCU|1|A|G|596
5TCU|1|A|U|597
5TCU|1|A|U|598
*
5TCU|1|A|A|657
5TCU|1|A|A|658
5TCU|1|A|C|659
5TCU|1|A|U|660
5TCU|1|A|U|661
5TCU|1|A|G|662
5TCU|1|A|A|663
*
5TCU|1|A|U|759
5TCU|1|A|G|760
5TCU|1|A|A|761
5TCU|1|A|C|762
5TCU|1|A|G|763
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain S3
- 30S ribosomal protein S12
- Chain S6
- 30S ribosomal protein S15
- Chain S8
- 30S ribosomal protein S17
- Chain SF
- 30S ribosomal protein S8
Coloring options: