Loop J3_5TCU

3D structure

PDB id: 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
Description: Methicillin sensitive Staphylococcus aureus 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: UAAGCUUAGUUGCC*GGCACUCUAAGUUGACUGCCGG*CCGGAGGAAGGUG
Length: 49 nucleotides
Bulged bases: 5TCU|1|A|G|1139, 5TCU|1|A|C|1172, 5TCU|1|A|U|1194
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5TCU|1|A|U|1128
5TCU|1|A|A|1129
5TCU|1|A|A|1130
5TCU|1|A|G|1131
5TCU|1|A|C|1132
5TCU|1|A|U|1133
5TCU|1|A|U|1134
5TCU|1|A|A|1135
5TCU|1|A|G|1136
5TCU|1|A|U|1137
5TCU|1|A|U|1138
5TCU|1|A|G|1139
5TCU|1|A|C|1140
5TCU|1|A|C|1141
*
5TCU|1|A|G|1154
5TCU|1|A|G|1155
5TCU|1|A|C|1156
5TCU|1|A|A|1157
5TCU|1|A|C|1158
5TCU|1|A|U|1159
5TCU|1|A|C|1160
5TCU|1|A|U|1161
5TCU|1|A|A|1162
5TCU|1|A|A|1163
5TCU|1|A|G|1164
5TCU|1|A|U|1165
5TCU|1|A|U|1166
5TCU|1|A|G|1167
5TCU|1|A|A|1168
5TCU|1|A|C|1169
5TCU|1|A|U|1170
5TCU|1|A|G|1171
5TCU|1|A|C|1172
5TCU|1|A|C|1173
5TCU|1|A|G|1174
5TCU|1|A|G|1175
*
5TCU|1|A|C|1183
5TCU|1|A|C|1184
5TCU|1|A|G|1185
5TCU|1|A|G|1186
5TCU|1|A|A|1187
5TCU|1|A|G|1188
5TCU|1|A|G|1189
5TCU|1|A|A|1190
5TCU|1|A|A|1191
5TCU|1|A|G|1192
5TCU|1|A|G|1193
5TCU|1|A|U|1194
5TCU|1|A|G|1195

Current chains

Chain A: 16S RRNA

Nearby chains

Chain S1: 30S ribosomal protein S10
Chain S5: 30S ribosomal protein S14 type Z
Chain SG: 30S ribosomal protein S7
Chain SH: 30S ribosomal protein S9

J3_5TCU_029