J3_5TCU_041

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_041 not in the Motif Atlas

Homologous match to J3_4LFB_010

Geometric discrepancy: 0.1938

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5TCU|1|A|G|47
5TCU|1|A|C|48
*
5TCU|1|A|G|369
5TCU|1|A|G|370
5TCU|1|A|A|371
5TCU|1|A|A|372
5TCU|1|A|U|373
5TCU|1|A|C|374
5TCU|1|A|U|375
*
5TCU|1|A|A|401
5TCU|1|A|G|402
5TCU|1|A|C|403

Current chains

Chain A

16S RRNA

Nearby chains

Chain S3

30S ribosomal protein S12

Chain S7

30S ribosomal protein S16