J3_5TCU_051

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_051 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.3813

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5TCU|1|B|G|1468
5TCU|1|B|G|1469
5TCU|1|B|G|1470
5TCU|1|B|A|1471
5TCU|1|B|C|1472
5TCU|1|B|G|1473
*
5TCU|1|B|C|1611
5TCU|1|B|C|1612
*
5TCU|1|B|G|1615
5TCU|1|B|A|1616
5TCU|1|B|A|1617
5TCU|1|B|A|1618
5TCU|1|B|A|1619
5TCU|1|B|G|1620
5TCU|1|B|C|1621
5TCU|1|B|C|1622

Current chains

Chain B

23S RRNA

Nearby chains

Chain L2

50S ribosomal protein L2