J3_5TGM_024
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 5TGM|1|2|U|1268
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TGM_024 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1175
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5TGM|1|2|U|1266
5TGM|1|2|C|1267
5TGM|1|2|U|1268
5TGM|1|2|U|1269
5TGM|1|2|A|1270
5TGM|1|2|G|1271
*
5TGM|1|2|C|1310
5TGM|1|2|G|1311
5TGM|1|2|A|1312
5TGM|1|2|G|1313
5TGM|1|2|A|1314
5TGM|1|2|C|1315
*
5TGM|1|2|G|1402
5TGM|1|2|C|1403
5TGM|1|2|A|1404
5TGM|1|2|A|1405
5TGM|1|2|U|1406
5TGM|1|2|A|1407
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- ES17
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S2
- 40S ribosomal protein S2
- Chain S3
- 40S ribosomal protein S3
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