J3_5TGM_025

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TGM_025 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.118

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5TGM|1|2|U|1276
5TGM|1|2|G|1277
*
5TGM|1|2|U|1286
5TGM|1|2|G|1287
5TGM|1|2|U|1288
5TGM|1|2|C|1289
*
5TGM|1|2|G|1301
5TGM|1|2|A|1302
5TGM|1|2|U|1303
5TGM|1|2|A|1304
5TGM|1|2|A|1305

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

ES17

Chain S0

40S ribosomal protein S0-A

Chain S2

40S ribosomal protein S2