J3_5TGM_035

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TGM_035 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2134

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5TGM|1|5|G|1230
5TGM|1|5|A|1231
5TGM|1|5|C|1232
*
5TGM|1|5|G|1256
5TGM|1|5|C|1257
5TGM|1|5|U|1258
5TGM|1|5|A|1259
5TGM|1|5|A|1260
5TGM|1|5|G|1261
5TGM|1|5|G|1262
*
5TGM|1|5|C|1277
5TGM|1|5|A|1278
5TGM|1|5|C|1279

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S Ribosomal Protein L12

Chain p0

60S Ribosomal Protein P0