J3_5TGM_083
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUG*CUUAU*AGACAUU
- Length
- 16 nucleotides
- Bulged bases
- 5TGM|1|5|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TGM_083 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.2706
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86017.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5TGM|1|5|A|2432
5TGM|1|5|U|2433
5TGM|1|5|U|2434
5TGM|1|5|G|2435
*
5TGM|1|5|C|2512
5TGM|1|5|U|2513
5TGM|1|5|U|2514
5TGM|1|5|A|2515
5TGM|1|5|U|2516
*
5TGM|1|5|A|2591
5TGM|1|5|G|2592
5TGM|1|5|A|2593
5TGM|1|5|C|2594
5TGM|1|5|A|2595
5TGM|1|5|U|2596
5TGM|1|5|U|2597
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A,60S Ribosomal Protein L8
- Chain m5
- 60S ribosomal protein L15-A
- Chain o6
- 60S ribosomal protein L36-A
- Chain s1
- 40S ribosomal protein S1-A
Coloring options: