J3_5U4I_003

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5U4I|1|A|U|686, 5U4I|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U4I_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0881

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5U4I|1|A|U|683
5U4I|1|A|G|684
5U4I|1|A|A|685
5U4I|1|A|U|686
5U4I|1|A|C|687
5U4I|1|A|U|688
5U4I|1|A|A|689
*
5U4I|1|A|U|773
5U4I|1|A|G|774
5U4I|1|A|G|775
*
5U4I|1|A|C|791
5U4I|1|A|A|792
5U4I|1|A|A|793
5U4I|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain C

50S ribosomal protein L2