3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
5U4I|1|A|U|2334, 5U4I|1|A|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5U4I|1|A|C|2295
5U4I|1|A|U|2296
5U4I|1|A|A|2297
5U4I|1|A|A|2298
5U4I|1|A|U|2299
*
5U4I|1|A|A|2317
5U4I|1|A|G|2318
5U4I|1|A|G|2319
5U4I|1|A|U|2320
5U4I|1|A|U|2321
5U4I|1|A|A|2322
5U4I|1|A|G|2323
*
5U4I|1|A|C|2332
5U4I|1|A|A|2333
5U4I|1|A|U|2334
5U4I|1|A|A|2335
5U4I|1|A|A|2336
5U4I|1|A|G|2337

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain P
50S ribosomal protein L18
Chain X
50S ribosomal protein L27
Chain x
Transfer RNA; tRNA

Coloring options:

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